{
  "_id": "6a16bb55acfb0bcc41d86dc3",
  "Package": "Peanut",
  "Version": "0.9-3",
  "Date": "2023/08/20",
  "Title": "Parameterized Bayesian Networks, Abstract Classes",
  "Author": "Russell Almond",
  "Maintainer": "Russell Almond <ralmond@fsu.edu>",
  "Authors@R": "person(given = \"Russell\",\nfamily = \"Almond\",\nrole = c(\"aut\", \"cre\"),\nemail = \"ralmond@fsu.edu\",\ncomment = c(ORCID = \"0000-0002-8876-9337\"))",
  "VignetteBuilder": "knitr",
  "Description": "This provides support of learning conditional probability\ntables parameterized using CPTtools. This provides and object\noriented layer on top of a CPTtools, to facilitate calculations\nwith Parameterized models for Bayesian networks.  Peanut is a\ncollection of abstract classes and generic functions defining a\nprotocol, with the intent that the protocol can be implemented\nwith different Bayes net engines.  The companion pacakge\nPNetica provides an implementation using Netica and RNetica.",
  "License": "Artistic-2.0",
  "URL": "http://pluto.coe.fsu.edu/RNetica",
  "Support": "c( 'Bill & Melinda Gates Foundation grant \"Games as\nLearning/Assessment: Stealth Assessment\" (#0PP1035331, Val\nShute, PI)', 'National Science Foundation grant \"DIP:\nGame-based Assessment and Support of STEM-related Competencies\"\n(#1628937, Val Shute, PI)', 'National Science Foundation grant\n\"Mathematical Learning via Architectural Design and Modeling\nUsing E-Rebuild.\" (\\#1720533, Fengfeng Ke, PI)', 'Institute of\nEducational Statistics Grant: \"Exploring adaptive cognitive and\naffective learning support for next-generation STEM learning\ngames.\" (#R305A170376-20, Val Shute and Russell Almond, PIs')",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://ralmond.r-universe.dev",
  "Date/Publication": "2026-01-27 22:17:27 UTC",
  "RemoteUrl": "https://github.com/ralmond/Peanut",
  "RemoteRef": "HEAD",
  "RemoteSha": "e3f6ea606a2d2d3efdf7b7b762730938d4d9999a",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-27 09:33:48 UTC",
    "User": "root"
  },
  "MD5sum": "402c46bf277a4d991306e302a664b6b8",
  "_user": "ralmond",
  "_type": "src",
  "_file": "Peanut_0.9-3.tar.gz",
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  "_filesize": 1292028,
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  "_created": "2026-05-27T09:33:48.000Z",
  "_published": "2026-05-27T09:37:25.212Z",
  "_distro": "noble",
  "_jobs": [
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  "_buildurl": "https://github.com/r-universe/ralmond/actions/runs/26503002929",
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  "_upstream": "https://github.com/ralmond/Peanut",
  "_commit": {
    "id": "e3f6ea606a2d2d3efdf7b7b762730938d4d9999a",
    "author": "Russell G Almond <russell.g.almond@gmail.com>",
    "committer": "Russell G Almond <russell.g.almond@gmail.com>",
    "message": "Added `as.data.frame()` to Qmat2Pnet and Omega2Pnet as Tibbles are broken.\n",
    "time": 1769552247
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    "name": "Russell Almond",
    "email": "ralmond@fsu.edu",
    "login": "ralmond",
    "orcid": "0000-0002-8876-9337",
    "description": "Assoc. Prof. of Measurement & Statistics @fsu",
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  "_dependencies": [
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      "package": "R",
      "version": ">= 3.0",
      "role": "Depends"
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    {
      "package": "CPTtools",
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    {
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    {
      "package": "utils",
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    {
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    {
      "package": "jsonlite",
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  "_usedby": 2,
  "_updates": [
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      "n": 2
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  "_tags": [],
  "_topics": [
    "bayesian-network",
    "knowledge-representation"
  ],
  "_stars": 1,
  "_contributors": [
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      "count": 42,
      "uuid": 1767426
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  "_exports": [
    "as.legal.name",
    "as.Pnet",
    "as.Pnode",
    "BuildAllTables",
    "BuildNetManifest",
    "BuildNodeManifest",
    "BuildTable",
    "calcExpTables",
    "calcPnetLLike",
    "calcStat",
    "ClearWarehouse",
    "CompensatoryGadget",
    "DPCGadget",
    "flattenStats",
    "flog.try",
    "GEMfit",
    "GetPriorWeight",
    "is.legal.name",
    "is.Pnet",
    "is.PnetWarehouse",
    "is.Pnode",
    "is.PnodeWarehouse",
    "is.valid",
    "isPnodeContinuous",
    "MakeCompensatoryGadget",
    "MakeDPCGadget",
    "MakeOffsetGadget",
    "MakeRegressionGadget",
    "maxAllTableParams",
    "maxCPTParam",
    "OffsetGadget",
    "Omega2Pnet",
    "Pnet",
    "Pnet2Omega",
    "Pnet2Qmat",
    "PnetAdjoin",
    "PnetCompile",
    "PnetDescription",
    "PnetDescription<-",
    "PnetDetach",
    "PnetFindNode",
    "PnetHub",
    "PnetHub<-",
    "PnetMakeStubNodes",
    "PnetName",
    "PnetName<-",
    "PnetPathname",
    "PnetPathname<-",
    "PnetPnodes",
    "PnetPnodes<-",
    "PnetPriorWeight",
    "PnetPriorWeight<-",
    "PnetRemoveStubNodes",
    "PnetSerialize",
    "PnetTitle",
    "PnetTitle<-",
    "PnetUnserialize",
    "Pnode",
    "PnodeAlphas",
    "PnodeAlphas<-",
    "PnodeBetas",
    "PnodeBetas<-",
    "PnodeDefaultAlphas",
    "PnodeDefaultBetas",
    "PnodeDescription",
    "PnodeDescription<-",
    "PnodeEAP",
    "PnodeEvidence",
    "PnodeEvidence<-",
    "PnodeLabels",
    "PnodeLabels<-",
    "PnodeLink",
    "PnodeLink<-",
    "PnodeLinkScale",
    "PnodeLinkScale<-",
    "PnodeLnAlphas",
    "PnodeLnAlphas<-",
    "PnodeMargin",
    "PnodeMedian",
    "PnodeMin",
    "PnodeMode",
    "PnodeName",
    "PnodeName<-",
    "PnodeNet",
    "PnodeNumParents",
    "PnodeNumStates",
    "PnodeParentNames",
    "PnodeParents",
    "PnodeParents<-",
    "PnodeParentStates",
    "PnodeParentTvals",
    "PnodePostWeight",
    "PnodePriorWeight",
    "PnodePriorWeight<-",
    "PnodeProbs",
    "PnodeProbs<-",
    "PnodeQ",
    "PnodeQ<-",
    "PnodeRules",
    "PnodeRules<-",
    "PnodeSD",
    "PnodeStateBounds",
    "PnodeStateBounds<-",
    "PnodeStateDescriptions",
    "PnodeStateDescriptions<-",
    "PnodeStates",
    "PnodeStates<-",
    "PnodeStateTitles",
    "PnodeStateTitles<-",
    "PnodeStateValues",
    "PnodeStateValues<-",
    "PnodeTitle",
    "PnodeTitle<-",
    "Qmat2Pnet",
    "RegressionGadget",
    "show",
    "Statistic",
    "StatName",
    "topsort",
    "unserializePnet",
    "WarehouseCopy",
    "WarehouseData",
    "WarehouseFetch",
    "WarehouseFree",
    "WarehouseInventory",
    "WarehouseMake",
    "WarehouseManifest",
    "WarehouseManifest<-",
    "WarehouseSave",
    "WarehouseSupply",
    "WarehouseUnpack"
  ],
  "_help": [
    {
      "page": "Peanut-package",
      "title": "Parameterized Bayesian Networks, Abstract Classes",
      "topics": [
        "Peanut-package",
        "Peanut"
      ]
    },
    {
      "page": "BuildNetManifest",
      "title": "Builds a network manifest from a list of Pnets",
      "topics": [
        "BuildNetManifest"
      ]
    },
    {
      "page": "BuildNodeManifest",
      "title": "Builds a table describing a set of Pnodes",
      "topics": [
        "BuildNodeManifest"
      ]
    },
    {
      "page": "BuildTable",
      "title": "Builds the conditional probability table for a Pnode",
      "topics": [
        "BuildAllTables",
        "BuildTable"
      ]
    },
    {
      "page": "calcExpTables",
      "title": "Calculate expected tables for a parameterized network",
      "topics": [
        "calcExpTables"
      ]
    },
    {
      "page": "calcPnetLLike",
      "title": "Calculates the log likelihood for a set of data under a Pnet model",
      "topics": [
        "calcPnetLLike"
      ]
    },
    {
      "page": "CompensatoryGadget",
      "title": "Shiny gadget for editing compensatory pnodes",
      "concept": [
        "CPT",
        "Compensatory",
        "partialCredit",
        "gradedResponse"
      ],
      "topics": [
        "CompensatoryGadget",
        "MakeCompensatoryGadget"
      ]
    },
    {
      "page": "DPCGadget",
      "title": "Shiny gadget for editinging compensatory pnodes",
      "concept": [
        "CPT",
        "Compensatory",
        "Conjuctive",
        "Disjunctive",
        "gradedResponse",
        "partialCredit"
      ],
      "topics": [
        "DPCGadget",
        "MakeDPCGadget"
      ]
    },
    {
      "page": "flattenStats",
      "title": "Flattens a statistic list into a numeric or character vector.",
      "topics": [
        "flattenStats"
      ]
    },
    {
      "page": "flog.try",
      "title": "Trys to execute an expression with errors logged.",
      "topics": [
        "flog.try"
      ]
    },
    {
      "page": "GEMfit",
      "title": "Fits the parameters of a parameterized network using the GEM algorithm",
      "topics": [
        "GEMfit"
      ]
    },
    {
      "page": "is.legal.name",
      "title": "Checks to see if names are valid for objects in warehouse.",
      "topics": [
        "as.legal.name",
        "is.legal.name"
      ]
    },
    {
      "page": "isPnodeContinuous",
      "title": "Functions for handling continuous nodes.",
      "topics": [
        "isPnodeContinuous",
        "PnodeStateBounds",
        "PnodeStateBounds<-"
      ]
    },
    {
      "page": "maxAllTableParams",
      "title": "Find optimal parameters of Pnet or Pnode to match expected tables",
      "topics": [
        "maxAllTableParams",
        "maxCPTParam"
      ]
    },
    {
      "page": "OffsetGadget",
      "title": "Shiny gadget for editing (offset) conjuctive and disjunctive pnodes",
      "concept": [
        "CPT",
        "Conjuctive",
        "Disjunctive",
        "partialCredit"
      ],
      "topics": [
        "MakeOffsetGadget",
        "OffsetGadget"
      ]
    },
    {
      "page": "Omega2Pnet",
      "title": "Constructs a parameterized network from an Omega matrix.",
      "topics": [
        "Omega2Pnet"
      ]
    },
    {
      "page": "Pnet",
      "title": "A Parameterized Bayesian network",
      "topics": [
        "as.Pnet",
        "is.Pnet",
        "Pnet",
        "Pnet,ANY-method"
      ]
    },
    {
      "page": "Pnet-class",
      "title": "Class '\"Pnet\"'",
      "topics": [
        "Pnet-class"
      ]
    },
    {
      "page": "Pnet2Omega",
      "title": "Constructs an Omega matrix from a parameterized network.",
      "topics": [
        "Pnet2Omega"
      ]
    },
    {
      "page": "Pnet2Qmat",
      "title": "Makes an augmented Q-matrix from a collection of parameterized nets",
      "topics": [
        "Pnet2Qmat"
      ]
    },
    {
      "page": "PnetAdjoin",
      "title": "Merges (or separates) two Pnets with common variables",
      "topics": [
        "PnetAdjoin",
        "PnetDetach"
      ]
    },
    {
      "page": "PnetCompile",
      "title": "Compiles a Parameterized Bayesian Network",
      "topics": [
        "PnetCompile"
      ]
    },
    {
      "page": "PnetFindNode",
      "title": "Finds nodes in a parameterized network.",
      "topics": [
        "PnetFindNode"
      ]
    },
    {
      "page": "PnetHub",
      "title": "Returns the name of the hub net if this is a spoke net.",
      "topics": [
        "PnetHub",
        "PnetHub<-"
      ]
    },
    {
      "page": "PnetMakeStubNodes",
      "title": "Creates (or removes) references to nodes in a network",
      "topics": [
        "PnetMakeStubNodes",
        "PnetRemoveStubNodes"
      ]
    },
    {
      "page": "PnetName",
      "title": "Gets or Sets the name of a Netica network.",
      "topics": [
        "PnetName",
        "PnetName,NULL-method",
        "PnetName<-"
      ]
    },
    {
      "page": "PnetPathname",
      "title": "Returns the path associated with a network.",
      "topics": [
        "PnetPathname",
        "PnetPathname<-"
      ]
    },
    {
      "page": "PnetPnodes",
      "title": "Returns a list of Pnodes associated with a Pnet",
      "topics": [
        "PnetPnodes",
        "PnetPnodes<-",
        "PnodeNet"
      ]
    },
    {
      "page": "PnetPriorWeight",
      "title": "Gets the weight to be associated with the prior table during EM learning",
      "topics": [
        "GetPriorWeight",
        "PnetPriorWeight",
        "PnetPriorWeight<-",
        "PnodePriorWeight",
        "PnodePriorWeight<-"
      ]
    },
    {
      "page": "PnetSerialize",
      "title": "Writes/restores network from a string.",
      "topics": [
        "PnetSerialize",
        "PnetUnserialize",
        "unserializePnet",
        "WarehouseUnpack"
      ]
    },
    {
      "page": "PnetTitle",
      "title": "Gets the title or comments associated with a parameterized network.",
      "topics": [
        "PnetDescription",
        "PnetDescription<-",
        "PnetTitle",
        "PnetTitle<-"
      ]
    },
    {
      "page": "PnetWarehouse-class",
      "title": "Class '\"PnetWarehouse\"'",
      "topics": [
        "PnetWarehouse",
        "PnetWarehouse-class"
      ]
    },
    {
      "page": "Pnode",
      "title": "A Parameterized Bayesian network node",
      "topics": [
        "as.Pnode",
        "is.Pnode",
        "Pnode"
      ]
    },
    {
      "page": "Pnode-class",
      "title": "Class '\"Pnode\"'",
      "topics": [
        "Pnode-class"
      ]
    },
    {
      "page": "PnodeBetas",
      "title": "Access the combination function slope parameters for a Pnode",
      "topics": [
        "PnodeBetas",
        "PnodeBetas<-"
      ]
    },
    {
      "page": "defaultAlphas",
      "title": "Reshapes alpha or beta vector based on rule and parents",
      "topics": [
        "PnodeDefaultAlphas",
        "PnodeDefaultBetas"
      ]
    },
    {
      "page": "PnodeEvidence",
      "title": "Accesses the value to which a given node has been instantiated.",
      "topics": [
        "PnodeEvidence",
        "PnodeEvidence<-"
      ]
    },
    {
      "page": "PnodeLabels",
      "title": "Lists or changes the labels associated with a parameterize node.",
      "topics": [
        "PnodeLabels",
        "PnodeLabels<-"
      ]
    },
    {
      "page": "PnodeLink",
      "title": "Accesses the link function associated with a Pnode",
      "topics": [
        "PnodeLink",
        "PnodeLink<-"
      ]
    },
    {
      "page": "PnodeLinkScale",
      "title": "Accesses the link function scale parameter associated with a Pnode",
      "topics": [
        "PnodeLinkScale",
        "PnodeLinkScale<-"
      ]
    },
    {
      "page": "PnodeLnAlphas",
      "title": "Access the combination function slope parameters for a Pnode",
      "topics": [
        "PnodeAlphas",
        "PnodeAlphas.default",
        "PnodeAlphas<-",
        "PnodeAlphas<-.default",
        "PnodeLnAlphas",
        "PnodeLnAlphas<-"
      ]
    },
    {
      "page": "PnodeMin-class",
      "title": "A minimal Pnode class for use in interface construction.",
      "topics": [
        "PnodeMin"
      ]
    },
    {
      "page": "PnodeName",
      "title": "Gets or sets name of a parameterized node.",
      "topics": [
        "PnodeName",
        "PnodeName<-"
      ]
    },
    {
      "page": "PnodeParents",
      "title": "Gets or sets the parents of a parameterized node.",
      "topics": [
        "PnodeNumParents",
        "PnodeParentNames",
        "PnodeParents",
        "PnodeParents<-",
        "PnodeParentStates"
      ]
    },
    {
      "page": "PnodeParentTvals",
      "title": "Fetches a list of numeric variables corresponding to parent states",
      "topics": [
        "PnodeParentTvals"
      ]
    },
    {
      "page": "PnodePostWeight",
      "title": "Fetches the posterior weight associated with a node",
      "topics": [
        "PnodePostWeight"
      ]
    },
    {
      "page": "PnodeProbs",
      "title": "Gets or sets the conditional probability table associated with a Netica node.",
      "topics": [
        "PnodeProbs",
        "PnodeProbs<-"
      ]
    },
    {
      "page": "PnodeQ",
      "title": "Accesses a state-wise Q-matrix associated with a Pnode",
      "topics": [
        "PnodeQ",
        "PnodeQ<-"
      ]
    },
    {
      "page": "PnodeRules",
      "title": "Accesses the combination rules for a Pnode",
      "topics": [
        "PnodeRules",
        "PnodeRules<-"
      ]
    },
    {
      "page": "PnodeStates",
      "title": "Accessor for states of a parameterized node.",
      "topics": [
        "PnodeNumStates",
        "PnodeStates",
        "PnodeStates<-"
      ]
    },
    {
      "page": "PnodeStateTitles",
      "title": "Accessors for the titles and descriptions associated with states of a parameterized node.",
      "topics": [
        "PnodeStateDescriptions",
        "PnodeStateDescriptions<-",
        "PnodeStateTitles",
        "PnodeStateTitles<-"
      ]
    },
    {
      "page": "PnodeStateValues",
      "title": "Accesses the numeric values associated with the state of a parameterized node.",
      "topics": [
        "PnodeStateValues",
        "PnodeStateValues<-"
      ]
    },
    {
      "page": "PnodeStats",
      "title": "Pnode Marginal Statistics",
      "topics": [
        "PnodeEAP",
        "PnodeMargin",
        "PnodeMedian",
        "PnodeMode",
        "PnodeSD"
      ]
    },
    {
      "page": "PnodeTitle",
      "title": "Gets the title or Description associated with a parameterized node node.",
      "topics": [
        "PnodeDescription",
        "PnodeDescription<-",
        "PnodeTitle",
        "PnodeTitle<-"
      ]
    },
    {
      "page": "PnodeWarehouse-class",
      "title": "Class '\"PnodeWarehouse\"'",
      "topics": [
        "PnodeWarehouse",
        "PnodeWarehouse-class"
      ]
    },
    {
      "page": "Qmat2Pnet",
      "title": "Makes or adjusts parameterized networks based on augmented Q-matrix",
      "topics": [
        "Qmat2Pnet"
      ]
    },
    {
      "page": "RegressionGadget",
      "title": "Shiny gadget for editing compensatory pnodes with normal link",
      "concept": [
        "CPT",
        "normalLink",
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