Package: PNetica 0.9-3

PNetica:Parameterized Bayesian Networks Netica Interface

This package provides RNetica implementation of Peanut interface.This provides an implementation of the Peanut protocol using the Netica (RNetica) Bayesian network engine. This allows parameters of parametric Bayesian network models written and Netica and using Peanut to be processed with R tools, and the parameter saved in the Netica objects.

Authors:Russell Almond

PNetica_0.9-3.tar.gz
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PNetica.pdf |PNetica.html✨
PNetica/json (API)

# InstallPNetica in R:

install.packages('PNetica',repos = c('https://ralmond.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ralmond/pnetica/issues

On CRAN:

bayesian-network

100 exports 1 stars 0.23 score 35 dependencies

Last updated 10 months agofrom:432695b61f

Exports:as.legal.name as.Pnet as.Pnode BNWarehouse BuildTable calcExpTables calcPnetLLike ClearWarehouse is.legal.name is.Pnet is.PnetWarehouse is.Pnode is.PnodeWarehouse is.valid isPnodeContinuous MakePnet.NeticaBN MakePnode.NeticaNode maxCPTParam NNWarehouse PnetCompile PnetDescription PnetDescription<-PnetFindNode PnetHub PnetHub<-PnetName PnetName<-PnetPathname PnetPathname<-PnetPnodes PnetPnodes<-PnetPriorWeight PnetPriorWeight<-PnetSerialize PnetTitle PnetTitle<-Pnode PnodeBetas PnodeBetas<-PnodeDescription PnodeDescription<-PnodeEAP PnodeEvidence PnodeEvidence<-PnodeLabels PnodeLabels<-PnodeLink PnodeLink<-PnodeLinkScale PnodeLinkScale<-PnodeLnAlphas PnodeLnAlphas<-PnodeMargin PnodeMedian PnodeMode PnodeName PnodeName<-PnodeNet PnodeNumParents PnodeNumStates PnodeParentNames PnodeParents PnodeParents<-PnodeParentTvals PnodePostWeight PnodePriorWeight PnodePriorWeight<-PnodeProbs PnodeProbs<-PnodeQ PnodeQ<-PnodeRules PnodeRules<-PnodeSD PnodeStateBounds PnodeStateBounds<-PnodeStateDescriptions PnodeStateDescriptions<-PnodeStates PnodeStates<-PnodeStateTitles PnodeStateTitles<-PnodeStateValues PnodeStateValues<-PnodeTitle PnodeTitle<-unserializePnet WarehouseCopy WarehouseData WarehouseDirectory WarehouseDirectory<-WarehouseFetch WarehouseFree WarehouseInventory WarehouseMake WarehouseManifest WarehouseManifest<-WarehouseSave WarehouseSupply WarehouseUnpack

Dependencies:cli cpp11 CPTtools dplyr einsum fansi formatR futile.logger futile.options generics glue jsonlite lambda.r lifecycle magrittr mathjaxr Peanut pillar pkgconfig purrr R.methodsS3 R.oo R.utils R6 Rcpp rlang RNetica stringi stringr tibble tidyr tidyselect utf8 vctrs withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Parameterized Bayesian Networks Netica Interface	PNetica-package PNetica
Constructor for the 'BNWarehosue' class.	BNWarehouse
Class '"BNWarehouse"'	as.legal.name,BNWarehouse-method BNWarehouse-class ClearWarehouse,BNWarehouse-method is.legal.name,BNWarehouse-method is.PnetWarehouse,BNWarehouse-method is.valid,BNWarehouse-method WarehouseCopy,BNWarehouse,NeticaBN-method WarehouseData,BNWarehouse-method WarehouseDirectory,BNWarehouse-method WarehouseDirectory<-,BNWarehouse-method WarehouseFetch,BNWarehouse-method WarehouseFree,BNWarehouse-method WarehouseInventory,BNWarehouse-method WarehouseMake,BNWarehouse-method WarehouseManifest,BNWarehouse-method WarehouseManifest<-,BNWarehouse,data.frame-method WarehouseSave,BNWarehouse,character-method WarehouseSave,BNWarehouse,NeticaBN-method WarehouseSupply,BNWarehouse-method WarehouseUnpack,BNWarehouse-method
Builds the conditional probability table for a Pnode	BuildTable,NeticaNode-method
Calculate expected tables for a Pnet.NeticaBN	calcExpTables,NeticaBN-method
Calculates the log likelihood for a set of data under a Pnet.NeticaBN model	calcPnetLLike,NeticaBN-method
Creates a NeticaBN object which is also a Pnet	MakePnet.NeticaBN
Makes a Pnode which is also a Netica Node	MakePnode.NeticaNode
Find optimal parameters of a Pnode.NeticaNode to match expected tables	maxCPTParam,NeticaNode-method
Constructor for the 'NNWarehosue' class.	NNWarehouse
Class '"NNWarehouse"'	as.legal.name,NNWarehouse-method ClearWarehouse,NNWarehouse-method is.legal.name,NNWarehouse-method is.PnodeWarehouse,NNWarehouse-method is.valid,NNWarehouse-method NNWarehouse-class WarehouseCopy,NNWarehouse,NeticaNode-method WarehouseData,NNWarehouse-method WarehouseFetch,NNWarehouse-method WarehouseFree,NNWarehouse-method WarehouseInventory,NNWarehouse-method WarehouseMake,NNWarehouse-method WarehouseManifest,NNWarehouse-method WarehouseManifest<-,NNWarehouse,data.frame-method WarehouseSave,NNWarehouse,ANY-method WarehouseSupply,NNWarehouse-method
Class '"NeticaBN"' as a '"Pnet"'	as.Pnet,NeticaBN-method is.Pnet,NeticaBN-method Pnet.NeticaBN PnetCompile,NeticaBN-method PnetDescription,NeticaBN-method PnetDescription<-,NeticaBN-method PnetHub,NeticaBN-method PnetHub<-,NeticaBN-method PnetName,NeticaBN-method PnetName<-,NeticaBN-method PnetPathname,NeticaBN-method PnetPathname<-,NeticaBN-method PnetPriorWeight,NeticaBN-method PnetPriorWeight<-,NeticaBN-method PnetTitle,NeticaBN-method PnetTitle<-,NeticaBN-method
Merges (or separates) two Pnets with common variables	PnetAdjoin,NeticaBN-method PnetDetach,NeticaBN-method
Finds nodes in a Netica Pnet.	PnetFindNode,NeticaBN-method PnetPnodes,NeticaBN-method PnetPnodes<-,NeticaBN-method
Gets or Sets the name of a Netica network.	PnetName PnetName<-
Methods for (un)serializing a Netica Network	PnetSerialize,NeticaBN-method PnetSerialize-methods unserializePnet,NeticaSession-method unserializePnet-methods
Gets the title or comments associated with a Netica network.	PnetDescription PnetDescription<- PnetTitle PnetTitle<-
Class '"NeticaNode"' as a '"Pnode"'	isPnodeContinuous,NeticaNode-method Pnode.NeticaNode PnodeDescription,NeticaNode-method PnodeDescription<-,NeticaNode-method PnodeLabels,NeticaNode-method PnodeLabels<-,NeticaNode-method PnodeName,NeticaNode-method PnodeName<-,NeticaNode-method PnodeNet,NeticaNode-method PnodeNumParents,NeticaNode-method PnodeParentNames,NeticaNode-method PnodeParents,NeticaNode-method PnodeParents<-,NeticaNode-method PnodeProbs,NeticaNode-method PnodeProbs<-,NeticaNode-method PnodeTitle,NeticaNode-method PnodeTitle<-,NeticaNode-method
Properties of class '"NeticaNode"' as a '"Pnode"'	as.Pnode,NeticaNode-method is.Pnode,NeticaNode-method Pnode,NeticaNode-method Pnode.Properties PnodeBetas,NeticaNode-method PnodeBetas<-,NeticaNode-method PnodeLink,NeticaNode-method PnodeLink<-,NeticaNode-method PnodeLinkScale,NeticaNode-method PnodeLinkScale<-,NeticaNode-method PnodeLnAlphas,NeticaNode-method PnodeLnAlphas<-,NeticaNode-method PnodePostWeight,NeticaNode-method PnodePriorWeight,NeticaNode-method PnodePriorWeight<-,NeticaNode-method PnodeQ,NeticaNode-method PnodeQ<-,NeticaNode-method PnodeRules,NeticaNode-method PnodeRules<-,NeticaNode-method
States of the '"NeticaNode"' as a '"Pnode"'	Pnode.States PnodeNumStates,NeticaNode-method PnodeStateBounds,NeticaNode-method PnodeStateBounds<-,NeticaNode-method PnodeStateDescriptions,NeticaNode-method PnodeStateDescriptions<-,NeticaNode-method PnodeStates,NeticaNode-method PnodeStates<-,NeticaNode-method PnodeStateTitles,NeticaNode-method PnodeStateTitles<-,NeticaNode-method PnodeStateValues,NeticaNode-method PnodeStateValues<-,NeticaNode-method
Gets or sets the value of a Pnode.	PnodeEvidence,NeticaNode-method PnodeEvidence.NeticaNode PnodeEvidence<-,NeticaNode,ANY-method PnodeEvidence<-,NeticaNode,character-method PnodeEvidence<-,NeticaNode,difftime-method PnodeEvidence<-,NeticaNode,factor-method PnodeEvidence<-,NeticaNode,logical-method PnodeEvidence<-,NeticaNode,NULL-method PnodeEvidence<-,NeticaNode,numeric-method
Fetches a list of numeric variables corresponding to parent states	PnodeParentTvals,NeticaNode-method
Statistic methods for '"NeticaBN"' class.	PnodeEAP,NeticaBN,character-method PnodeEAP,NeticaBN,NeticaNode-method PnodeMargin,NeticaBN,character-method PnodeMargin,NeticaBN,NeticaNode-method PnodeMedian,NeticaBN,character-method PnodeMedian,NeticaBN,NeticaNode-method PnodeMode,NeticaBN,character-method PnodeMode,NeticaBN,NeticaNode-method PnodeSD,NeticaBN,character-method PnodeSD,NeticaBN,NeticaNode-method Statistic.NeticaNode
Gets or sets the directory associated with an BNWarehouse	WarehouseDirectory WarehouseDirectory<-